2024 Qtl cartographer 2.5

Qtl cartographer 2.5

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August undefined, 2024

WebJan 21, 2024 · QTL mapping. The WinQTL Cartographer 2.5 with the CIM algorithm was used to identify the QTLs for eight traits in the four F 2 populations. As a result, a total of 50 QTLs with R 2 of 0.1–59.24% were identified, 27 were for fiber quality traits and 16 were for yield traits. A total of 23, 4, 8, ... WebApr 18, 2024 · For QTL analysis with WinQTL cartographer 2.5, a permutation test (parameter 1000) was used to determine the QTL with a LOD threshold of 2.5. CIM was performed using Model 6, a value of 5 for ...

粳型短光敏核不育系5021S育性基因的定位-黄胜东赵志刚江玲翟虎 …

WebJun 12, 2024 · Pearson’s correlation coefficients between the traits were calculated using IBM SPSS Statistics 19. QTL analysis was conducted using the composite interval mapping (CIM) approach of the Windows QTL Cartographer 2.5 . The CIM were performed using the default parameters with backward and forward regressions with a probability threshold of … Webqtl×环境互作分析表明, 仅qph1-1、qflw2、qepp1和qtgw5-1 4个qtl存在显著的加性×环境互作效应。进一步对qtgw5-1定位区间所包含的gw5测序分析表明, 高产株系和低产株系的gw5等位基因分别来自亲本中嘉早17和d50, 这与检测到的qtgw5-1的加性效应来自亲本中嘉早17相符。 ... flexible surge protector power strip

Genetic analysis of three maize husk traits by QTL mapping in a …

Web以育性转换表现为'长光高温下可育,短光低温下不育'反(向)光、温敏核不育种质5021S为材料,5021S与轮回422杂交组合F2作为遗传群体进行育性相关基因的QTL定位,利用124对SSR标记构建了一张全长1912.3 cM平均图距为14.98 cM的饱和分子连锁图谱.利 … WebStep 3—Analyzing data using QTL Mapping Methods With WinQTLCart able to view the data, you can then select any of six different analysis methods. The end result for some of these methods is another MCD file, but in most cases the process will create a .QRT result file that WinQTLCart can use to graph QTL information. WebMay 26, 2024 · With the ultra-high-density linkage maps, a total of four QTLs were identified after 1000 permutations with an empirical logarithm of the odds (LOD) threshold of 3.5, 4.0 and 3.5 for HL, HN and HW, respectively (Table 2 and Fig. 2 ). The average of QTL intervals was 6.0 Mb with a range of 5.1–8.9 Mb. chelsea inn hotel

Identification of candidate genes for aphid resistance in upland …

Composite Interval Mapping and Multiple Interval Mapping

WebWindows QTL Cartographer V2.5 WinQTLCart Installation Making sure you have the latest release If you already have a version of WinQTLCart on your PC: Open your version of … WebApr 12, 2024 · In TOC1, three QTLs (qOC-1-1, qOC-1-2 and qOC-1-3) distributed on chromosome 3, 5 and 9.The QTL, qOC-1-3, with the largest effect (30.84% of the phenotypic variation) was located on chromosome 9.The parental KB717001 allele at this locus had an additive effect of 0.24% for increased oil content. The second QTL qOC-1-2 was located … flexible survival hunter commandsWeb1.3 QTL 定位方法 QTL 定位分析使用 WinQTL Cartographer V. 2.5[13] 复合区间作图(CIM)和多标记联合分析。 CIM 法使用标准模型 6, 步长为 1 cM, 采用向前回归法搜寻 QTL 和公共因子, 窗口大小设为 10 cM, 最多 5 个高 P 值的背景标记作为协变量控制其遗传背景。 chelsea inn lombard san francisco

"WebJan 1, 1996 · QTL mapping was conducted by QTL Cartographer 2.5 (Basten et al. 1997) with the composite interval mapping method (Zeng 1994). The permutation test was run … " - Qtl cartographer 2.5

Qtl cartographer 2.5

Composite interval mapping and multiple interval mapping

http://gaow.github.io/genetic-analysis-software/q/qtl-cartographer/ WebDec 10, 2024 · To detect the QTL controlling seed set and number of sterile spikelets per spike in BC 1 populations, composite interval mapping with a 5-cM window and a maximum of 10 marker cofactors per model was carried out using the Windows QTL Cartographer version 2.5 (Wang et al., 2012). Tests were performed at 1-cM intervals, and cofactors …

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WebApr 11, 2016 · Windows QTL Cartographer 2.5 was used to identify QTLs by composite interval mapping method on the environment by environment basis of the 11 environments. The LOD threshold for declaring significant QTLs included the QTLs across environments calculated by a permutation test with the mapping step of 1.0 cM, five control markers, … WebSep 9, 2024 · The composite interval mapping (CIM) method in Windows QTL Cartographer 2.5 was used for QTL calling with the logarithm of odds (LOD) threshold of 3.0 (Wang et al., 2010). The percentage of the phenotypic variance explained by a QTL was indicated by the determination coefficient (R 2 %). Analysis of candidate genes in the target mapping …

WebQTL analysis for the different traits was conducted using the Windows QTL Cartographer 2.5 software . A composite interval mapping method was used to detect salt resistance in all traits, and an LOD of 2.0 or more was used. ... Five QTLs related to chlorophyll contents were identified on chromosomes 2, 5, 6, 10, and 11. Three QTLs (qCHL-2, qCHL ... WebQTL Cartographer Record added by Jurg Ott (the original Rockefeller list) Version Window version 2.5 (September 2006) Description A program to map quantitative traits sing a …

WebNov 11, 2014 · The Windows version of QTL Cartographer V2.5 [ 36] was used to conduct composite interval mapping (CIM) analysis based on model 6. The forward and backward regression method was used as a cofactor to control the genetic background while testing a position in the genome. The walking speed chosen for the QTL analysis was 2.0°CM. WebSep 29, 2001 · QTL Cartographer2.5 software program was used to analyze marker-QTL associations using test statistics composite interval mapping calibrated at one thousand test permutations to calculate the...

Web2007 N.C. State University, Bioinformatics Research Center I Windows QTL Cartographer 2.5 Table of Contents About Windows QTL Cartographer 4 WinQTLCart... QTL-cartographer. Mapping Quantitative Trait Loci with QTL Cartographer There are two stages to...les in a working directory under QTLCartWin. When you ran Rmap you set ... WinQTLCart. 2005 N ...

WebQuantitative trait locus (QTL) analysis was performed to identify the loci controlling these floral traits, using backcross recombinant inbred lines derived from a cross between Nipponbare and W630. A total of 11 significant QTLs were identified. chelsea inn mt. bethel pahttp://gaow.github.io/genetic-analysis-software/q/qtl-cartographer/ chelsea inn mount bethelWebDec 1, 2024 · The contribution rate (R 2) and additive effect of a presumptive QTL were simultaneously calculated using Windows QTL Cartographer 2.5. The QTL nomenclature described by McCouch et al. (1997) was adopted in this study, each designation was named begins with ‘q’ followed by the abbreviation of the trait name, the linkage group, and the ... chelsea inowWebQTL Cartographer is a suite of programs to map quantitative traits using a map of molecular markers. Windows QTL Cartographer maps quantitative trait loci in cross populations … flexible survival milking facility locationhttp://statgen.ncsu.edu/qtlcart/WinQTLCart.pdf chelsea inn toronto downtownWebWindows QTL Cartographer V2.5_011 Release Date: 01 - AUG - 2012 Shengchu Wang, Christopher J. Basten and Zhao-Bang Zeng Program in Statistical Genetics, North Carolina … chelsea inn torontoWebQTL Cartographer Record added by Jurg Ott (the original Rockefeller list) Version Window version 2.5 (September 2006) Description A program to map quantitative traits sing a map of molecular markers. Author Christopher J. Basten Bruce S. Weir Zhao-Bang Zeng Shengchu Wang (Dept Statistics, North Carolina State University); URL chelsea inn nyc